Sequence filename : /auto/dufayard/res/simu_2.4.5/data11.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11592504 . Log(lk) : * -> -10726.201963 . Log(lk) : -10726.201963 -> -10652.624142 2 swaps done . Log(lk) : -10652.624142 -> -10639.585920 3 swaps done . Log(lk) : -10639.585920 -> -10635.575968 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10600.062017 -> -10596.100400 1 swap done . Log(lk) : -10596.100400 -> -10594.595588 0 swap done . Log(lk) : -10594.595588 -> -10593.760483 1 swap done . Log(lk) : -10593.760483 -> -10593.315180 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10593.170525 -> -10592.914081 0 swap done . Log(lk) : -10592.914081 -> -10592.766888 0 swap done . Log(lk) : -10592.766888 -> -10592.679600 0 swap done . Log(lk) : -10592.679600 -> -10592.627073 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.624118 -> -10592.591025 0 swap done . Last optimization step... . Log(lk) : * -> -10592.560071 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.560071 -> -10592.545655 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.545655 -> -10592.540620 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.540620 -> -10592.538258 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.538258 -> -10592.537326 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.537326 -> -10592.536854 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536854 -> -10592.536648 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536648 -> -10592.536536 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536536 -> -10592.536486 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536486 -> -10592.536459 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536459 -> -10592.536447 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536447 -> -10592.536440 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536440 -> -10592.536437 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536437 -> -10592.536435 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10592.536435 -> -10592.536434 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10592.536434 . Time used 0h0m32s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26.93user 0.00system 0:32.68elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps