Sequence filename : /auto/dufayard/res/simu_2.4.5/data12.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 8814344 . Log(lk) : * -> -6070.773985 . Log(lk) : -6070.773985 -> -6054.983397 2 swaps done . Log(lk) : -6054.983397 -> -6053.399539 0 swap done . Log(lk) : -6053.399539 -> -6053.084331 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6032.526530 -> -6032.298902 0 swap done . Log(lk) : -6032.298902 -> -6032.251612 0 swap done . Log(lk) : -6032.251612 -> -6032.237864 0 swap done . Log(lk) : -6032.237864 -> -6032.233221 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6032.205716 -> -6032.203707 0 swap done . Log(lk) : -6032.203707 -> -6032.202962 0 swap done . Last optimization step... . Log(lk) : * -> -6032.202548 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6032.202548 -> -6032.202458 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6032.202458 -> -6032.202447 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6032.202447 -> -6032.202446 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6032.202446 -> -6032.202445 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -6032.202445 . Time used 0h0m14s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 12.33user 0.00system 0:14.64elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps