Sequence filename : /auto/dufayard/res/simu_2.4.5/data13.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11112640 . Log(lk) : * -> -10603.239788 . Log(lk) : -10603.239788 -> -10523.980175 2 swaps done . Log(lk) : -10523.980175 -> -10506.237722 3 swaps done . Log(lk) : -10506.237722 -> -10498.667251 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10436.499732 -> -10422.382861 3 swaps done . Log(lk) : -10422.382861 -> -10416.680240 1 swap done . Log(lk) : -10416.680240 -> -10414.841810 2 swaps done . Log(lk) : -10414.841810 -> -10414.243292 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10414.036574 -> -10413.614512 1 swap done . Log(lk) : -10413.614512 -> -10413.459395 0 swap done . Log(lk) : -10413.459395 -> -10413.425336 0 swap done . Log(lk) : -10413.425336 -> -10413.410141 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.408676 -> -10413.399926 0 swap done . Log(lk) : -10413.399926 -> -10413.394337 0 swap done . Log(lk) : -10413.394337 -> -10413.390436 0 swap done . Last optimization step... . Log(lk) : * -> -10413.385663 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.385663 -> -10413.381314 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.381314 -> -10413.378360 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.378360 -> -10413.376396 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.376396 -> -10413.375013 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.375013 -> -10413.374059 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.374059 -> -10413.373384 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.373384 -> -10413.372914 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.372914 -> -10413.372582 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.372582 -> -10413.372349 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.372349 -> -10413.372185 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.372185 -> -10413.372070 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.372070 -> -10413.371989 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371989 -> -10413.371932 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371932 -> -10413.371891 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371891 -> -10413.371863 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371863 -> -10413.371843 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371843 -> -10413.371830 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371830 -> -10413.371820 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371820 -> -10413.371813 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371813 -> -10413.371808 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371808 -> -10413.371804 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371804 -> -10413.371802 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371802 -> -10413.371800 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371800 -> -10413.371799 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10413.371799 -> -10413.371798 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10413.371798 . Time used 0h0m39s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 36.26user 0.00system 0:38.60elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps