Sequence filename : /auto/dufayard/res/simu_2.4.5/data15.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10708544 . Log(lk) : * -> -9281.960898 . Log(lk) : -9281.960898 -> -9220.922041 2 swaps done . Log(lk) : -9220.922041 -> -9210.889330 1 swap done . Log(lk) : -9210.889330 -> -9208.453508 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9150.956780 -> -9147.543453 1 swap done . Log(lk) : -9147.543453 -> -9146.464227 0 swap done . Log(lk) : -9146.464227 -> -9145.941119 0 swap done . Log(lk) : -9145.941119 -> -9145.657504 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.546748 -> -9145.371007 0 swap done . Log(lk) : -9145.371007 -> -9145.271771 0 swap done . Log(lk) : -9145.271771 -> -9145.214439 0 swap done . Last optimization step... . Log(lk) : * -> -9145.164390 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.164390 -> -9145.139087 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.139087 -> -9145.131847 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.131847 -> -9145.129530 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.129530 -> -9145.128838 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.128838 -> -9145.128634 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.128634 -> -9145.128571 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.128571 -> -9145.128553 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.128553 -> -9145.128547 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.128547 -> -9145.128546 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9145.128546 -> -9145.128545 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9145.128545 . Time used 0h0m21s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.46user 0.00system 0:21.60elapsed 90%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps