Sequence filename : /auto/dufayard/res/simu_2.4.5/data16.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 6339256 . Log(lk) : * -> -3820.735280 . Log(lk) : -3820.735280 -> -3808.671001 5 swaps done . Log(lk) : -3808.671001 -> -3807.630337 2 swaps done . Log(lk) : -3807.630337 -> -3807.523301 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3795.507152 -> -3795.429028 0 swap done . Log(lk) : -3795.429028 -> -3795.417540 0 swap done . Log(lk) : -3795.417540 -> -3795.415569 0 swap done . Log(lk) : -3795.415569 -> -3795.415234 0 swap done . Last optimization step... . Log(lk) : * -> -3795.415145 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3795.415145 -> -3795.398226 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3795.398226 -> -3795.398146 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3795.398146 -> -3795.398144 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3795.398144 -> -3795.398144 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -3795.398144 . Time used 0h0m10s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 7.09user 0.00system 0:09.46elapsed 74%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps