Sequence filename : /auto/dufayard/res/simu_2.4.5/data17.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9950864 . Log(lk) : * -> -7984.475359 . Log(lk) : -7984.475359 -> -7944.303118 3 swaps done . Log(lk) : -7944.303118 -> -7935.812278 2 swaps done . Log(lk) : -7935.812278 -> -7931.807497 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7895.541519 -> -7894.127879 0 swap done . Log(lk) : -7894.127879 -> -7893.821533 0 swap done . Log(lk) : -7893.821533 -> -7893.711662 0 swap done . Log(lk) : -7893.711662 -> -7893.668234 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.578656 -> -7893.559859 0 swap done . Last optimization step... . Log(lk) : * -> -7893.548828 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.548828 -> -7893.546305 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.546305 -> -7893.545748 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.545748 -> -7893.545624 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.545624 -> -7893.545584 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.545584 -> -7893.545578 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.545578 -> -7893.545576 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7893.545576 -> -7893.545576 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -7893.545576 . Time used 0h0m18s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 14.43user 0.00system 0:18.60elapsed 77%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps