Sequence filename : /auto/dufayard/res/simu_2.4.5/data18.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10531752 . Log(lk) : * -> -8375.933259 . Log(lk) : -8375.933259 -> -8324.884610 3 swaps done . Log(lk) : -8324.884610 -> -8315.459794 2 swaps done . Log(lk) : -8315.459794 -> -8313.917165 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8285.930281 -> -8284.104872 0 swap done . Log(lk) : -8284.104872 -> -8283.006689 1 swap done . Log(lk) : -8283.006689 -> -8282.101143 0 swap done . Log(lk) : -8282.101143 -> -8281.924559 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.792937 -> -8281.715315 0 swap done . Log(lk) : -8281.715315 -> -8281.681342 0 swap done . Log(lk) : -8281.681342 -> -8281.665227 0 swap done . Log(lk) : -8281.665227 -> -8281.657464 0 swap done . Last optimization step... . Log(lk) : * -> -8281.651948 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.651948 -> -8281.649365 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.649365 -> -8281.648961 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648961 -> -8281.648877 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648877 -> -8281.648845 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648845 -> -8281.648824 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648824 -> -8281.648805 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648805 -> -8281.648789 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648789 -> -8281.648774 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648774 -> -8281.648761 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648761 -> -8281.648749 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648749 -> -8281.648738 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648738 -> -8281.648728 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648728 -> -8281.648719 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648719 -> -8281.648711 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648711 -> -8281.648704 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648704 -> -8281.648697 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648697 -> -8281.648691 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648691 -> -8281.648686 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648686 -> -8281.648681 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648681 -> -8281.648677 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648677 -> -8281.648673 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648673 -> -8281.648670 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648670 -> -8281.648666 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648666 -> -8281.648664 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648664 -> -8281.648661 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648661 -> -8281.648659 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648659 -> -8281.648657 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648657 -> -8281.648655 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648655 -> -8281.648653 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648653 -> -8281.648651 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648651 -> -8281.648650 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648650 -> -8281.648649 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648649 -> -8281.648648 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648648 -> -8281.648647 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8281.648647 -> -8281.648646 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8281.648646 . Time used 0h0m41s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 35.41user 0.00system 0:40.85elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps