Sequence filename : /auto/dufayard/res/simu_2.4.5/data19.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10683288 . Log(lk) : * -> -9204.322124 . Log(lk) : -9204.322124 -> -9158.279862 2 swaps done . Log(lk) : -9158.279862 -> -9150.589483 1 swap done . Log(lk) : -9150.589483 -> -9148.205165 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9108.907356 -> -9106.682047 0 swap done . Log(lk) : -9106.682047 -> -9106.111683 1 swap done . Log(lk) : -9106.111683 -> -9105.802489 1 swap done . Log(lk) : -9105.802489 -> -9105.642890 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.565509 -> -9105.507388 0 swap done . Log(lk) : -9105.507388 -> -9105.480330 0 swap done . Log(lk) : -9105.480330 -> -9105.466296 0 swap done . Log(lk) : -9105.466296 -> -9105.458876 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.458590 -> -9105.454565 0 swap done . Log(lk) : -9105.454565 -> -9105.452416 0 swap done . Last optimization step... . Log(lk) : * -> -9105.450642 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.450642 -> -9105.450048 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.450048 -> -9105.449910 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.449910 -> -9105.449878 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.449878 -> -9105.449871 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.449871 -> -9105.449869 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9105.449869 -> -9105.449869 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9105.449869 . Time used 0h0m21s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.77user 0.00system 0:21.75elapsed 90%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps