Sequence filename : /auto/dufayard/res/simu_2.4.5/data2.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11466224 . Log(lk) : * -> -9817.177571 . Log(lk) : -9817.177571 -> -9760.383724 2 swaps done . Log(lk) : -9760.383724 -> -9751.032971 2 swaps done . Log(lk) : -9751.032971 -> -9748.407312 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9727.678148 -> -9725.348116 1 swap done . Log(lk) : -9725.348116 -> -9724.643745 0 swap done . Log(lk) : -9724.643745 -> -9724.340577 0 swap done . Log(lk) : -9724.340577 -> -9724.186873 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9724.087308 -> -9723.991642 0 swap done . Log(lk) : -9723.991642 -> -9723.939514 0 swap done . Log(lk) : -9723.939514 -> -9723.909742 0 swap done . Last optimization step... . Log(lk) : * -> -9723.882695 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.882695 -> -9723.868676 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.868676 -> -9723.864709 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.864709 -> -9723.863664 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.863664 -> -9723.863341 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.863341 -> -9723.863250 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.863250 -> -9723.863223 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.863223 -> -9723.863216 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.863216 -> -9723.863214 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9723.863214 -> -9723.863213 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9723.863213 . Time used 0h0m25s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 20.22user 0.00system 0:24.55elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps