Sequence filename : /auto/dufayard/res/simu_2.4.5/data20.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10582264 . Log(lk) : * -> -9871.545760 . Log(lk) : -9871.545760 -> -9813.266488 3 swaps done . Log(lk) : -9813.266488 -> -9802.924016 1 swap done . Log(lk) : -9802.924016 -> -9800.045384 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9750.876060 -> -9748.684727 0 swap done . Log(lk) : -9748.684727 -> -9748.036224 0 swap done . Log(lk) : -9748.036224 -> -9747.729062 0 swap done . Log(lk) : -9747.729062 -> -9747.567697 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.537456 -> -9747.446947 0 swap done . Last optimization step... . Log(lk) : * -> -9747.368355 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.368355 -> -9747.338108 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.338108 -> -9747.328155 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.328155 -> -9747.324878 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.324878 -> -9747.323839 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323839 -> -9747.323495 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323495 -> -9747.323386 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323386 -> -9747.323349 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323349 -> -9747.323337 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323337 -> -9747.323334 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323334 -> -9747.323332 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9747.323332 -> -9747.323332 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9747.323332 . Time used 0h0m22s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.06user 0.00system 0:22.02elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps