Sequence filename : /auto/dufayard/res/simu_2.4.5/data24.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 4748128 . Log(lk) : * -> -2567.174353 . Log(lk) : -2567.174353 -> -2563.337010 4 swaps done . Log(lk) : -2563.337010 -> -2562.693730 1 swap done . Log(lk) : -2562.693730 -> -2562.594051 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2556.251134 -> -2556.206097 2 swaps done . Log(lk) : -2556.206097 -> -2556.198715 0 swap done . Log(lk) : -2556.198715 -> -2556.197187 0 swap done . Log(lk) : -2556.197187 -> -2556.196843 0 swap done . Last optimization step... . Log(lk) : * -> -2556.196739 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2556.196739 -> -2556.186717 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2556.186717 -> -2556.186678 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2556.186678 -> -2556.186676 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2556.186676 -> -2556.186676 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -2556.186676 . Time used 0h0m5s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 5.37user 0.00system 0:05.61elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps