Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data25.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 10557008

. Log(lk) :               * ->    -8618.969249 
. Log(lk) :    -8618.969249 ->    -8592.475038   2 swaps done 
. Log(lk) :    -8592.475038 ->    -8589.821643   0 swap  done
. Log(lk) :    -8589.821643 ->    -8589.276105   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8566.169945 ->    -8565.806959   0 swap  done
. Log(lk) :    -8565.806959 ->    -8565.738283   0 swap  done
. Log(lk) :    -8565.738283 ->    -8565.714219   0 swap  done
. Log(lk) :    -8565.714219 ->    -8565.704198   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -8565.697874 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.697874 ->    -8565.642026 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.642026 ->    -8565.640878 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.640878 ->    -8565.640672 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.640672 ->    -8565.640634 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.640634 ->    -8565.640627 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.640627 ->    -8565.640625 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8565.640625 ->    -8565.640625 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -8565.640625 


. Time used 0h0m18s

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14.21user 0.00system 0:19.15elapsed 74%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps