Sequence filename : /auto/dufayard/res/simu_2.4.5/data26.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 8006152 . Log(lk) : * -> -4872.495428 . Log(lk) : -4872.495428 -> -4858.673251 2 swaps done . Log(lk) : -4858.673251 -> -4856.887240 0 swap done . Log(lk) : -4856.887240 -> -4856.598170 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4844.482126 -> -4844.389436 0 swap done . Log(lk) : -4844.389436 -> -4844.374429 0 swap done . Log(lk) : -4844.374429 -> -4844.371087 0 swap done . Log(lk) : -4844.371087 -> -4844.370259 0 swap done . Last optimization step... . Log(lk) : * -> -4844.369970 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4844.369970 -> -4844.347056 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4844.347056 -> -4844.346984 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4844.346984 -> -4844.346978 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4844.346978 -> -4844.346978 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -4844.346978 . Time used 0h0m12s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 9.58user 0.00system 0:12.50elapsed 76%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps