Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data28.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 10632776

. Log(lk) :               * ->    -9557.782309 
. Log(lk) :    -9557.782309 ->    -9522.905556   1 swap  done
. Log(lk) :    -9522.905556 ->    -9518.079294   0 swap  done
. Log(lk) :    -9518.079294 ->    -9517.006512   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9475.772447 ->    -9474.846953   0 swap  done
. Log(lk) :    -9474.846953 ->    -9474.698496   0 swap  done
. Log(lk) :    -9474.698496 ->    -9474.640189   0 swap  done
. Log(lk) :    -9474.640189 ->    -9474.612936   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -9474.593316 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.593316 ->    -9474.438412 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.438412 ->    -9474.435777 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.435777 ->    -9474.435342 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.435342 ->    -9474.435248 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.435248 ->    -9474.435223 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.435223 ->    -9474.435217 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.435217 ->    -9474.435215 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9474.435215 ->    -9474.435215 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -9474.435215 


. Time used 0h0m16s

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15.06user 0.00system 0:15.72elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps