Sequence filename : /auto/dufayard/res/simu_2.4.5/data30.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11339944 . Log(lk) : * -> -11164.411273 . Log(lk) : -11164.411273 -> -11096.009469 3 swaps done . Log(lk) : -11096.009469 -> -11086.164194 1 swap done . Log(lk) : -11086.164194 -> -11084.254156 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11037.988868 -> -11035.444984 0 swap done . Log(lk) : -11035.444984 -> -11034.994898 0 swap done . Log(lk) : -11034.994898 -> -11034.829974 0 swap done . Log(lk) : -11034.829974 -> -11034.750679 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.646357 -> -11034.600295 0 swap done . Last optimization step... . Log(lk) : * -> -11034.566210 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.566210 -> -11034.553113 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.553113 -> -11034.549270 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.549270 -> -11034.548007 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.548007 -> -11034.547597 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547597 -> -11034.547435 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547435 -> -11034.547372 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547372 -> -11034.547344 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547344 -> -11034.547332 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547332 -> -11034.547327 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547327 -> -11034.547324 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547324 -> -11034.547323 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -11034.547323 -> -11034.547322 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -11034.547322 . Time used 0h0m25s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 22.69user 0.00system 0:25.20elapsed 90%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps