Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data31.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9597280

. Log(lk) :               * ->    -7267.089224 
. Log(lk) :    -7267.089224 ->    -7228.436331   3 swaps done 
. Log(lk) :    -7228.436331 ->    -7222.662001   2 swaps done 
. Log(lk) :    -7222.662001 ->    -7221.855786   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.992143 ->    -7185.349084   0 swap  done
. Log(lk) :    -7185.349084 ->    -7185.273035   0 swap  done
. Log(lk) :    -7185.273035 ->    -7185.248259   0 swap  done
. Log(lk) :    -7185.248259 ->    -7185.238273   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.227308 ->    -7185.222935   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7185.220224 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.220224 ->    -7185.219602 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.219602 ->    -7185.219483 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.219483 ->    -7185.219450 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.219450 ->    -7185.219445 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.219445 ->    -7185.219444 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7185.219444 ->    -7185.219443 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7185.219443 


. Time used 0h0m15s

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13.55user 0.00system 0:15.55elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps