Sequence filename : /auto/dufayard/res/simu_2.4.5/data32.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9193184 . Log(lk) : * -> -6060.705231 . Log(lk) : -6060.705231 -> -6044.392072 2 swaps done . Log(lk) : -6044.392072 -> -6042.739109 0 swap done . Log(lk) : -6042.739109 -> -6042.412563 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6031.303815 -> -6031.124122 0 swap done . Log(lk) : -6031.124122 -> -6031.101649 0 swap done . Log(lk) : -6031.101649 -> -6031.096257 0 swap done . Log(lk) : -6031.096257 -> -6031.094617 0 swap done . Last optimization step... . Log(lk) : * -> -6031.093831 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6031.093831 -> -6031.089085 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6031.089085 -> -6031.088999 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6031.088999 -> -6031.088993 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6031.088993 -> -6031.088992 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -6031.088992 . Time used 0h0m14s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 10.27user 0.00system 0:13.41elapsed 76%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps