Sequence filename : /auto/dufayard/res/simu_2.4.5/data33.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11339944 . Log(lk) : * -> -10173.683491 . Log(lk) : -10173.683491 -> -10122.342336 0 swap done . Log(lk) : -10122.342336 -> -10112.800511 2 swaps done . Log(lk) : -10112.800511 -> -10110.194665 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10085.452583 -> -10083.119819 0 swap done . Log(lk) : -10083.119819 -> -10082.515092 0 swap done . Log(lk) : -10082.515092 -> -10082.246906 0 swap done . Log(lk) : -10082.246906 -> -10082.117770 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10082.052287 -> -10081.982942 0 swap done . Last optimization step... . Log(lk) : * -> -10081.932162 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.932162 -> -10081.915611 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.915611 -> -10081.910610 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.910610 -> -10081.908910 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.908910 -> -10081.908272 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.908272 -> -10081.908022 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.908022 -> -10081.907920 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.907920 -> -10081.907878 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.907878 -> -10081.907861 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.907861 -> -10081.907854 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.907854 -> -10081.907851 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.907851 -> -10081.907850 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10081.907850 -> -10081.907850 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10081.907850 . Time used 0h0m23s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 21.17user 0.00system 0:22.94elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps