Sequence filename : /auto/dufayard/res/simu_2.4.5/data34.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9016392 . Log(lk) : * -> -5931.321628 . Log(lk) : -5931.321628 -> -5899.688841 3 swaps done . Log(lk) : -5899.688841 -> -5894.861297 2 swaps done . Log(lk) : -5894.861297 -> -5894.121931 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5878.820424 -> -5878.428582 0 swap done . Log(lk) : -5878.428582 -> -5878.341890 0 swap done . Log(lk) : -5878.341890 -> -5878.313985 0 swap done . Log(lk) : -5878.313985 -> -5878.303998 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5878.287742 -> -5878.283900 0 swap done . Last optimization step... . Log(lk) : * -> -5878.281790 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5878.281790 -> -5878.281390 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5878.281390 -> -5878.281337 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5878.281337 -> -5878.281330 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5878.281330 -> -5878.281329 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -5878.281329 . Time used 0h0m13s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 11.20user 0.00system 0:12.54elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps