Sequence filename : /auto/dufayard/res/simu_2.4.5/data35.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11264176 . Log(lk) : * -> -10606.444832 . Log(lk) : -10606.444832 -> -10539.486361 2 swaps done . Log(lk) : -10539.486361 -> -10528.920625 1 swap done . Log(lk) : -10528.920625 -> -10526.216011 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10472.161017 -> -10468.062711 1 swap done . Log(lk) : -10468.062711 -> -10467.181024 0 swap done . Log(lk) : -10467.181024 -> -10466.817528 0 swap done . Log(lk) : -10466.817528 -> -10466.634786 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.504685 -> -10466.398492 0 swap done . Log(lk) : -10466.398492 -> -10466.345082 0 swap done . Log(lk) : -10466.345082 -> -10466.315078 0 swap done . Last optimization step... . Log(lk) : * -> -10466.286343 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.286343 -> -10466.276131 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.276131 -> -10466.273500 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.273500 -> -10466.272693 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.272693 -> -10466.272479 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.272479 -> -10466.272417 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.272417 -> -10466.272401 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.272401 -> -10466.272397 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.272397 -> -10466.272396 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10466.272396 -> -10466.272395 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10466.272395 . Time used 0h0m22s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.36user 0.00system 0:22.59elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps