Sequence filename : /auto/dufayard/res/simu_2.4.5/data36.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 6111952 . Log(lk) : * -> -3620.784839 . Log(lk) : -3620.784839 -> -3615.463924 0 swap done . Log(lk) : -3615.463924 -> -3614.756884 0 swap done . Log(lk) : -3614.756884 -> -3614.620004 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.445043 -> -3597.299392 0 swap done . Log(lk) : -3597.299392 -> -3597.268217 0 swap done . Log(lk) : -3597.268217 -> -3597.257001 0 swap done . Last optimization step... . Log(lk) : * -> -3597.249828 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.249828 -> -3597.235385 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.235385 -> -3597.233140 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.233140 -> -3597.231905 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.231905 -> -3597.231208 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.231208 -> -3597.230808 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230808 -> -3597.230578 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230578 -> -3597.230444 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230444 -> -3597.230367 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230367 -> -3597.230322 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230322 -> -3597.230297 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230297 -> -3597.230281 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230281 -> -3597.230273 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230273 -> -3597.230268 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230268 -> -3597.230265 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230265 -> -3597.230263 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3597.230263 -> -3597.230262 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -3597.230262 . Time used 0h0m12s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 11.32user 0.00system 0:12.78elapsed 88%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps