Sequence filename : /auto/dufayard/res/simu_2.4.5/data37.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11365200 . Log(lk) : * -> -11701.880585 . Log(lk) : -11701.880585 -> -11613.022019 3 swaps done . Log(lk) : -11613.022019 -> -11593.605036 3 swaps done . Log(lk) : -11593.605036 -> -11587.782089 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11532.691901 -> -11528.405134 0 swap done . Log(lk) : -11528.405134 -> -11527.080284 0 swap done . Log(lk) : -11527.080284 -> -11526.412384 0 swap done . Log(lk) : -11526.412384 -> -11526.030131 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11525.926426 -> -11525.488144 1 swap done . Log(lk) : -11525.488144 -> -11525.058087 0 swap done . Log(lk) : -11525.058087 -> -11524.970406 0 swap done . Log(lk) : -11524.970406 -> -11524.930181 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.925517 -> -11524.903487 0 swap done . Log(lk) : -11524.903487 -> -11524.891119 0 swap done . Log(lk) : -11524.891119 -> -11524.883972 0 swap done . Last optimization step... . Log(lk) : * -> -11524.877561 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.877561 -> -11524.874934 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.874934 -> -11524.874043 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.874043 -> -11524.873764 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.873764 -> -11524.873666 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.873666 -> -11524.873635 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.873635 -> -11524.873625 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.873625 -> -11524.873621 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.873621 -> -11524.873620 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11524.873620 -> -11524.873620 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -11524.873620 . Time used 0h0m28s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26.14user 0.00system 0:28.16elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps