Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data38.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 10531752

. Log(lk) :               * ->    -9819.493024 
. Log(lk) :    -9819.493024 ->    -9770.721347   2 swaps done 
. Log(lk) :    -9770.721347 ->    -9762.913940   2 swaps done 
. Log(lk) :    -9762.913940 ->    -9761.271341   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9711.742674 ->    -9710.077294   1 swap  done
. Log(lk) :    -9710.077294 ->    -9709.677529   1 swap  done
. Log(lk) :    -9709.677529 ->    -9709.547629   0 swap  done
. Log(lk) :    -9709.547629 ->    -9709.443487   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.228212 ->    -9709.179261   0 swap  done
. Log(lk) :    -9709.179261 ->    -9709.156517   0 swap  done
. Log(lk) :    -9709.156517 ->    -9709.145728   0 swap  done
. Log(lk) :    -9709.145728 ->    -9709.140585   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -9709.136884 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.136884 ->    -9709.135154 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.135154 ->    -9709.134868 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.134868 ->    -9709.134813 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.134813 ->    -9709.134801 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.134801 ->    -9709.134799 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9709.134799 ->    -9709.134799 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -9709.134799 


. Time used 0h0m17s

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16.64user 0.00system 0:16.78elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps