Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data39.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 11390456

. Log(lk) :               * ->   -11068.467080 
. Log(lk) :   -11068.467080 ->   -11017.818321   0 swap  done
. Log(lk) :   -11017.818321 ->   -11012.463626   0 swap  done
. Log(lk) :   -11012.463626 ->   -11011.032859   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10965.316882 ->   -10963.932764   0 swap  done
. Log(lk) :   -10963.932764 ->   -10963.636980   0 swap  done
. Log(lk) :   -10963.636980 ->   -10963.499868   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -10963.393795 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.393795 ->   -10963.319777 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.319777 ->   -10963.314041 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.314041 ->   -10963.312895 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.312895 ->   -10963.312639 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.312639 ->   -10963.312574 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.312574 ->   -10963.312560 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.312560 ->   -10963.312556 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10963.312556 ->   -10963.312555 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -10963.312555 


. Time used 0h0m17s

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14.60user 0.00system 0:16.78elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps