Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data4.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 10885336

. Log(lk) :               * ->    -9105.526161 
. Log(lk) :    -9105.526161 ->    -9068.540549   1 swap  done
. Log(lk) :    -9068.540549 ->    -9063.064186   0 swap  done
. Log(lk) :    -9063.064186 ->    -9061.534342   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9031.334706 ->    -9029.623174   1 swap  done
. Log(lk) :    -9029.623174 ->    -9029.083134   0 swap  done
. Log(lk) :    -9029.083134 ->    -9028.811794   0 swap  done
. Log(lk) :    -9028.811794 ->    -9028.660983   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.593034 ->    -9028.501690   0 swap  done
. Log(lk) :    -9028.501690 ->    -9028.448986   0 swap  done
. Log(lk) :    -9028.448986 ->    -9028.418015   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -9028.389793 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.389793 ->    -9028.376026 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.376026 ->    -9028.372629 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.372629 ->    -9028.371200 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.371200 ->    -9028.370823 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.370823 ->    -9028.370666 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.370666 ->    -9028.370624 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.370624 ->    -9028.370607 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.370607 ->    -9028.370602 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.370602 ->    -9028.370600 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9028.370600 ->    -9028.370599 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -9028.370599 


. Time used 0h0m21s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

19.22user 0.00system 0:20.62elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps