Sequence filename : /auto/dufayard/res/simu_2.4.5/data40.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10759056 . Log(lk) : * -> -9868.411871 . Log(lk) : -9868.411871 -> -9820.979956 3 swaps done . Log(lk) : -9820.979956 -> -9810.959948 3 swaps done . Log(lk) : -9810.959948 -> -9808.949055 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9768.551114 -> -9767.497812 1 swap done . Log(lk) : -9767.497812 -> -9767.219261 0 swap done . Log(lk) : -9767.219261 -> -9767.100166 0 swap done . Log(lk) : -9767.100166 -> -9767.040039 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9767.003593 -> -9766.970138 0 swap done . Log(lk) : -9766.970138 -> -9766.952128 0 swap done . Log(lk) : -9766.952128 -> -9766.942189 0 swap done . Last optimization step... . Log(lk) : * -> -9766.933543 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.933543 -> -9766.929432 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.929432 -> -9766.928152 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.928152 -> -9766.927730 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927730 -> -9766.927573 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927573 -> -9766.927514 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927514 -> -9766.927491 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927491 -> -9766.927481 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927481 -> -9766.927477 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927477 -> -9766.927476 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9766.927476 -> -9766.927475 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9766.927475 . Time used 0h0m21s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 18.62user 0.00system 0:21.22elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps