Sequence filename : /auto/dufayard/res/simu_2.4.5/data41.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 8789088 . Log(lk) : * -> -5608.679386 . Log(lk) : -5608.679386 -> -5587.289726 3 swaps done . Log(lk) : -5587.289726 -> -5583.956307 1 swap done . Log(lk) : -5583.956307 -> -5582.806848 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5568.972917 -> -5568.011240 1 swap done . Log(lk) : -5568.011240 -> -5567.699707 0 swap done . Log(lk) : -5567.699707 -> -5567.650953 0 swap done . Log(lk) : -5567.650953 -> -5567.639013 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5567.621329 -> -5567.616966 0 swap done . Log(lk) : -5567.616966 -> -5567.615611 0 swap done . Log(lk) : -5567.615611 -> -5567.615147 0 swap done . Last optimization step... . Log(lk) : * -> -5567.614925 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5567.614925 -> -5567.614854 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5567.614854 -> -5567.614847 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5567.614847 -> -5567.614846 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -5567.614846 . Time used 0h0m14s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 12.78user 0.00system 0:15.21elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps