Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data42.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 7046424

. Log(lk) :               * ->    -4243.134252 
. Log(lk) :    -4243.134252 ->    -4228.054686   3 swaps done 
. Log(lk) :    -4228.054686 ->    -4227.030634   2 swaps done 
. Log(lk) :    -4227.030634 ->    -4226.945523   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.710098 ->    -4214.618211   1 swap  done
. Log(lk) :    -4214.618211 ->    -4214.600875   0 swap  done
. Log(lk) :    -4214.600875 ->    -4214.593630   0 swap  done
. Log(lk) :    -4214.593630 ->    -4214.589266   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.579037 ->    -4214.574972   0 swap  done
. Log(lk) :    -4214.574972 ->    -4214.571933   0 swap  done
. Log(lk) :    -4214.571933 ->    -4214.569570   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -4214.566690 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.566690 ->    -4214.563550 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.563550 ->    -4214.561775 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.561775 ->    -4214.560772 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.560772 ->    -4214.560209 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.560209 ->    -4214.559893 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.559893 ->    -4214.559812 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4214.559812 ->    -4214.559812 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -4214.559812 


. Time used 0h0m15s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

11.76user 0.00system 0:14.52elapsed 80%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps