Sequence filename : /auto/dufayard/res/simu_2.4.5/data43.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10809568 . Log(lk) : * -> -10365.884710 . Log(lk) : -10365.884710 -> -10321.580176 3 swaps done . Log(lk) : -10321.580176 -> -10315.134634 1 swap done . Log(lk) : -10315.134634 -> -10313.457645 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10263.227817 -> -10261.956754 1 swap done . Log(lk) : -10261.956754 -> -10261.708173 0 swap done . Log(lk) : -10261.708173 -> -10261.644564 0 swap done . Log(lk) : -10261.644564 -> -10261.616457 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.585257 -> -10261.571816 0 swap done . Log(lk) : -10261.571816 -> -10261.565063 0 swap done . Log(lk) : -10261.565063 -> -10261.561602 0 swap done . Last optimization step... . Log(lk) : * -> -10261.558935 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.558935 -> -10261.557661 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.557661 -> -10261.557413 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.557413 -> -10261.557355 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.557355 -> -10261.557343 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.557343 -> -10261.557340 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10261.557340 -> -10261.557340 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10261.557340 . Time used 0h0m20s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 17.25user 0.00system 0:20.23elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps