Sequence filename : /auto/dufayard/res/simu_2.4.5/data45.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11087384 . Log(lk) : * -> -10302.672797 . Log(lk) : -10302.672797 -> -10220.434610 3 swaps done . Log(lk) : -10220.434610 -> -10195.059132 1 swap done . Log(lk) : -10195.059132 -> -10189.336523 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10132.550750 -> -10128.710951 0 swap done . Log(lk) : -10128.710951 -> -10127.740782 0 swap done . Log(lk) : -10127.740782 -> -10127.324241 0 swap done . Log(lk) : -10127.324241 -> -10127.117831 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.875443 -> -10126.760574 0 swap done . Last optimization step... . Log(lk) : * -> -10126.670645 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.670645 -> -10126.640916 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.640916 -> -10126.633413 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.633413 -> -10126.630951 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.630951 -> -10126.630373 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.630373 -> -10126.630188 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.630188 -> -10126.630146 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.630146 -> -10126.630133 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.630133 -> -10126.630130 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10126.630130 -> -10126.630129 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10126.630129 . Time used 0h0m21s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 17.24user 0.00system 0:20.58elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps