Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data5.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 11365200

. Log(lk) :               * ->   -11153.504661 
. Log(lk) :   -11153.504661 ->   -11092.174705   0 swap  done
. Log(lk) :   -11092.174705 ->   -11083.545301   0 swap  done
. Log(lk) :   -11083.545301 ->   -11081.556790   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11039.245637 ->   -11037.360228   0 swap  done
. Log(lk) :   -11037.360228 ->   -11036.938690   0 swap  done
. Log(lk) :   -11036.938690 ->   -11036.773277   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -11036.661274 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.661274 ->   -11036.524429 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.524429 ->   -11036.517246 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.517246 ->   -11036.515808 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.515808 ->   -11036.515540 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.515540 ->   -11036.515480 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.515480 ->   -11036.515468 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.515468 ->   -11036.515465 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11036.515465 ->   -11036.515465 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -11036.515465 


. Time used 0h0m17s

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14.69user 0.00system 0:17.90elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps