Sequence filename : /auto/dufayard/res/simu_2.4.5/data50.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11112640 . Log(lk) : * -> -10339.473100 . Log(lk) : -10339.473100 -> -10275.834719 3 swaps done . Log(lk) : -10275.834719 -> -10263.014967 3 swaps done . Log(lk) : -10263.014967 -> -10260.729447 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10220.267584 -> -10218.927160 0 swap done . Log(lk) : -10218.927160 -> -10218.547477 0 swap done . Log(lk) : -10218.547477 -> -10218.375054 0 swap done . Log(lk) : -10218.375054 -> -10218.289378 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.246574 -> -10218.201626 0 swap done . Last optimization step... . Log(lk) : * -> -10218.166829 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.166829 -> -10218.154262 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.154262 -> -10218.151520 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.151520 -> -10218.150776 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.150776 -> -10218.150617 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.150617 -> -10218.150573 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.150573 -> -10218.150564 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.150564 -> -10218.150561 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10218.150561 -> -10218.150561 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10218.150561 . Time used 0h0m21s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 16.33user 0.00system 0:20.75elapsed 78%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps