Sequence filename : /auto/dufayard/res/simu_2.4.5/data51.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10102400 . Log(lk) : * -> -8499.523581 . Log(lk) : -8499.523581 -> -8463.731320 2 swaps done . Log(lk) : -8463.731320 -> -8458.409877 0 swap done . Log(lk) : -8458.409877 -> -8457.632336 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8413.138174 -> -8412.407503 0 swap done . Log(lk) : -8412.407503 -> -8412.284382 0 swap done . Log(lk) : -8412.284382 -> -8412.235758 0 swap done . Log(lk) : -8412.235758 -> -8412.212389 0 swap done . Last optimization step... . Log(lk) : * -> -8412.194922 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.194922 -> -8412.184676 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.184676 -> -8412.183383 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.183383 -> -8412.183024 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.183024 -> -8412.182929 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.182929 -> -8412.182897 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.182897 -> -8412.182888 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.182888 -> -8412.182884 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.182884 -> -8412.182883 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8412.182883 -> -8412.182883 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8412.182883 . Time used 0h0m20s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 14.55user 0.00system 0:20.60elapsed 70%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps