Sequence filename : /auto/dufayard/res/simu_2.4.5/data53.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10834824 . Log(lk) : * -> -9684.068770 . Log(lk) : -9684.068770 -> -9606.748993 3 swaps done . Log(lk) : -9606.748993 -> -9593.758392 2 swaps done . Log(lk) : -9593.758392 -> -9591.378303 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9549.606835 -> -9545.880533 0 swap done . Log(lk) : -9545.880533 -> -9545.056317 0 swap done . Log(lk) : -9545.056317 -> -9544.702685 0 swap done . Log(lk) : -9544.702685 -> -9544.519016 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.284800 -> -9544.160580 0 swap done . Log(lk) : -9544.160580 -> -9544.102289 0 swap done . Last optimization step... . Log(lk) : * -> -9544.056913 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.056913 -> -9544.033076 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.033076 -> -9544.024905 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.024905 -> -9544.021949 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.021949 -> -9544.020869 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020869 -> -9544.020470 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020470 -> -9544.020321 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020321 -> -9544.020266 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020266 -> -9544.020245 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020245 -> -9544.020237 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020237 -> -9544.020234 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020234 -> -9544.020233 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9544.020233 -> -9544.020233 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9544.020233 . Time used 0h0m20s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.04user 0.00system 0:20.74elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps