Sequence filename : /auto/dufayard/res/simu_2.4.5/data54.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 6869632 . Log(lk) : * -> -4455.885809 . Log(lk) : -4455.885809 -> -4449.902318 1 swap done . Log(lk) : -4449.902318 -> -4449.320736 0 swap done . Log(lk) : -4449.320736 -> -4449.211261 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4425.054537 -> -4424.959373 0 swap done . Log(lk) : -4424.959373 -> -4424.938048 0 swap done . Log(lk) : -4424.938048 -> -4424.925885 0 swap done . Log(lk) : -4424.925885 -> -4424.915736 0 swap done . Last optimization step... . Log(lk) : * -> -4424.900098 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4424.900098 -> -4424.815381 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4424.815381 -> -4424.796485 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4424.796485 -> -4424.794805 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4424.794805 -> -4424.794803 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4424.794803 -> -4424.794802 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -4424.794802 . Time used 0h0m10s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 8.78user 0.00system 0:09.64elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps