Sequence filename : /auto/dufayard/res/simu_2.4.5/data55.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9294208 . Log(lk) : * -> -6421.429509 . Log(lk) : -6421.429509 -> -6394.716957 2 swaps done . Log(lk) : -6394.716957 -> -6391.479743 0 swap done . Log(lk) : -6391.479743 -> -6390.799173 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6372.087488 -> -6371.737786 0 swap done . Log(lk) : -6371.737786 -> -6371.683547 0 swap done . Log(lk) : -6371.683547 -> -6371.668486 0 swap done . Log(lk) : -6371.668486 -> -6371.663508 0 swap done . Last optimization step... . Log(lk) : * -> -6371.660967 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6371.660967 -> -6371.622457 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6371.622457 -> -6371.622162 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6371.622162 -> -6371.622148 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6371.622148 -> -6371.622147 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6371.622147 -> -6371.622147 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -6371.622147 . Time used 0h0m12s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 11.32user 0.00system 0:11.83elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps