Sequence filename : /auto/dufayard/res/simu_2.4.5/data56.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10178168 . Log(lk) : * -> -8320.432493 . Log(lk) : -8320.432493 -> -8276.361270 2 swaps done . Log(lk) : -8276.361270 -> -8268.757460 0 swap done . Log(lk) : -8268.757460 -> -8266.896764 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8235.270241 -> -8233.388553 0 swap done . Log(lk) : -8233.388553 -> -8232.897249 0 swap done . Log(lk) : -8232.897249 -> -8232.609227 2 swaps done . Log(lk) : -8232.609227 -> -8232.397859 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.351830 -> -8232.301510 0 swap done . Log(lk) : -8232.301510 -> -8232.281302 0 swap done . Log(lk) : -8232.281302 -> -8232.272021 0 swap done . Log(lk) : -8232.272021 -> -8232.267583 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.267542 -> -8232.265347 0 swap done . Last optimization step... . Log(lk) : * -> -8232.263810 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.263810 -> -8232.263329 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.263329 -> -8232.263228 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.263228 -> -8232.263217 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.263217 -> -8232.263214 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8232.263214 -> -8232.263214 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8232.263214 . Time used 0h0m20s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 17.67user 0.00system 0:20.56elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps