Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data58.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9471000

. Log(lk) :               * ->    -7042.490156 
. Log(lk) :    -7042.490156 ->    -7021.039731   2 swaps done 
. Log(lk) :    -7021.039731 ->    -7017.525862   3 swaps done 
. Log(lk) :    -7017.525862 ->    -7016.609122   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.955916 ->    -6983.637797   2 swaps done 
. Log(lk) :    -6983.637797 ->    -6983.617874   2 swaps done 
. Log(lk) :    -6983.617874 ->    -6983.611846   1 swap  done
. Log(lk) :    -6983.611846 ->    -6983.608327   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.570571 ->    -6983.608431   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.570571 ->    -6983.425260   1 swap  done
. Log(lk) :    -6983.425260 ->    -6983.340346   0 swap  done
. Log(lk) :    -6983.340346 ->    -6983.333679   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.333631 ->    -6983.332677   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -6983.332409 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.332409 ->    -6983.332367 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.332367 ->    -6983.332358 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.332358 ->    -6983.332357 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6983.332357 ->    -6983.332356 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -6983.332356 


. Time used 0h0m17s

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15.64user 0.00system 0:17.49elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps