Sequence filename : /auto/dufayard/res/simu_2.4.5/data59.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10809568 . Log(lk) : * -> -10238.418811 . Log(lk) : -10238.418811 -> -10170.063803 3 swaps done . Log(lk) : -10170.063803 -> -10156.901512 3 swaps done . Log(lk) : -10156.901512 -> -10154.430483 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10101.889081 -> -10098.341352 3 swaps done . Log(lk) : -10098.341352 -> -10098.494026 3 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10098.341352 -> -10096.003064 3 swaps done . Log(lk) : -10096.003064 -> -10095.219729 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10095.214184 -> -10095.227688 2 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10095.214184 -> -10094.820766 2 swaps done . Log(lk) : -10094.820766 -> -10094.356434 1 swap done . Log(lk) : -10094.356434 -> -10093.704202 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.702098 -> -10093.514152 0 swap done . Log(lk) : -10093.514152 -> -10093.429081 0 swap done . Log(lk) : -10093.429081 -> -10093.385231 0 swap done . Log(lk) : -10093.385231 -> -10093.361047 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.359744 -> -10093.345651 0 swap done . Log(lk) : -10093.345651 -> -10093.337602 0 swap done . Last optimization step... . Log(lk) : * -> -10093.330466 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.330466 -> -10093.327446 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.327446 -> -10093.326590 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.326590 -> -10093.326353 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.326353 -> -10093.326288 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.326288 -> -10093.326271 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.326271 -> -10093.326267 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.326267 -> -10093.326266 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10093.326266 -> -10093.326265 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10093.326265 . Time used 0h0m30s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 25.11user 0.00system 0:29.86elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps