Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data6.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9496256

. Log(lk) :               * ->    -7073.056806 
. Log(lk) :    -7073.056806 ->    -7051.511121   1 swap  done
. Log(lk) :    -7051.511121 ->    -7049.461529   1 swap  done
. Log(lk) :    -7049.461529 ->    -7049.060672   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7025.084491 ->    -7024.425311   1 swap  done
. Log(lk) :    -7024.425311 ->    -7024.318004   0 swap  done
. Log(lk) :    -7024.318004 ->    -7024.275494   0 swap  done
. Log(lk) :    -7024.275494 ->    -7024.255510   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.219798 ->    -7024.209479   0 swap  done
. Log(lk) :    -7024.209479 ->    -7024.204420   0 swap  done
. Log(lk) :    -7024.204420 ->    -7024.201829   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7024.199790 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.199790 ->    -7024.199170 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.199170 ->    -7024.199035 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.199035 ->    -7024.199001 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.199001 ->    -7024.198993 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.198993 ->    -7024.198990 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7024.198990 ->    -7024.198990 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7024.198990 


. Time used 0h0m16s

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15.34user 0.00system 0:15.67elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps