Sequence filename : /auto/dufayard/res/simu_2.4.5/data60.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10935848 . Log(lk) : * -> -10343.030460 . Log(lk) : -10343.030460 -> -10283.153730 3 swaps done . Log(lk) : -10283.153730 -> -10272.881608 2 swaps done . Log(lk) : -10272.881608 -> -10270.677920 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10210.797646 -> -10208.408504 1 swap done . Log(lk) : -10208.408504 -> -10208.122760 0 swap done . Log(lk) : -10208.122760 -> -10208.038764 0 swap done . Log(lk) : -10208.038764 -> -10207.871664 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10207.769578 -> -10206.560090 1 swap done . Log(lk) : -10206.560090 -> -10206.364370 0 swap done . Log(lk) : -10206.364370 -> -10206.341289 0 swap done . Log(lk) : -10206.341289 -> -10206.335041 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.334746 -> -10206.332258 0 swap done . Log(lk) : -10206.332258 -> -10206.330894 0 swap done . Log(lk) : -10206.330894 -> -10206.329932 0 swap done . Last optimization step... . Log(lk) : * -> -10206.328668 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.328668 -> -10206.326929 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.326929 -> -10206.325383 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.325383 -> -10206.323908 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.323908 -> -10206.322490 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.322490 -> -10206.321123 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.321123 -> -10206.319802 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.319802 -> -10206.318526 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.318526 -> -10206.317294 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.317294 -> -10206.316104 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.316104 -> -10206.314954 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.314954 -> -10206.313844 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.313844 -> -10206.312771 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.312771 -> -10206.312499 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10206.312499 -> -10206.312498 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10206.312498 . Time used 0h0m33s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 29.80user 0.00system 0:33.36elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps