Sequence filename : /auto/dufayard/res/simu_2.4.5/data61.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11188408 . Log(lk) : * -> -10715.554790 . Log(lk) : -10715.554790 -> -10647.913769 4 swaps done . Log(lk) : -10647.913769 -> -10637.844606 3 swaps done . Log(lk) : -10637.844606 -> -10635.282206 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10589.744083 -> -10586.852926 2 swaps done . Log(lk) : -10586.852926 -> -10586.092901 1 swap done . Log(lk) : -10586.092901 -> -10585.705112 0 swap done . Log(lk) : -10585.705112 -> -10585.563867 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.421770 -> -10585.342120 0 swap done . Log(lk) : -10585.342120 -> -10585.301210 0 swap done . Log(lk) : -10585.301210 -> -10585.278634 0 swap done . Log(lk) : -10585.278634 -> -10585.266021 0 swap done . Last optimization step... . Log(lk) : * -> -10585.255259 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.255259 -> -10585.250456 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.250456 -> -10585.249151 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.249151 -> -10585.248804 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.248804 -> -10585.248695 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.248695 -> -10585.248666 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.248666 -> -10585.248656 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.248656 -> -10585.248654 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10585.248654 -> -10585.248653 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10585.248653 . Time used 0h0m22s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.87user 0.00system 0:22.54elapsed 88%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps