Sequence filename : /auto/dufayard/res/simu_2.4.5/data62.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10051888 . Log(lk) : * -> -8264.462083 . Log(lk) : -8264.462083 -> -8220.432813 3 swaps done . Log(lk) : -8220.432813 -> -8214.177407 0 swap done . Log(lk) : -8214.177407 -> -8212.741890 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8169.083624 -> -8167.526614 0 swap done . Log(lk) : -8167.526614 -> -8167.317480 0 swap done . Log(lk) : -8167.317480 -> -8167.238505 1 swap done . Log(lk) : -8167.238505 -> -8167.203107 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.124070 -> -8167.107370 0 swap done . Log(lk) : -8167.107370 -> -8167.099364 0 swap done . Log(lk) : -8167.099364 -> -8167.095312 0 swap done . Log(lk) : -8167.095312 -> -8167.093241 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.093132 -> -8167.092035 0 swap done . Last optimization step... . Log(lk) : * -> -8167.091206 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.091206 -> -8167.090903 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.090903 -> -8167.090840 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.090840 -> -8167.090824 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.090824 -> -8167.090820 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8167.090820 -> -8167.090819 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8167.090819 . Time used 0h0m22s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 18.16user 0.00system 0:22.65elapsed 80%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps