Sequence filename : /auto/dufayard/res/simu_2.4.5/data64.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10935848 . Log(lk) : * -> -9654.366253 . Log(lk) : -9654.366253 -> -9606.810638 3 swaps done . Log(lk) : -9606.810638 -> -9596.232090 2 swaps done . Log(lk) : -9596.232090 -> -9594.028264 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9572.303852 -> -9570.962636 1 swap done . Log(lk) : -9570.962636 -> -9570.695482 0 swap done . Log(lk) : -9570.695482 -> -9570.599704 0 swap done . Log(lk) : -9570.599704 -> -9570.555667 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.521355 -> -9570.498852 0 swap done . Log(lk) : -9570.498852 -> -9570.487870 0 swap done . Log(lk) : -9570.487870 -> -9570.482825 0 swap done . Last optimization step... . Log(lk) : * -> -9570.479364 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.479364 -> -9570.478373 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.478373 -> -9570.478151 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.478151 -> -9570.478099 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.478099 -> -9570.478087 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.478087 -> -9570.478084 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9570.478084 -> -9570.478083 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9570.478083 . Time used 0h0m19s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 16.64user 0.00system 0:19.11elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps