Sequence filename : /auto/dufayard/res/simu_2.4.5/data65.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11668272 . Log(lk) : * -> -12300.543275 . Log(lk) : -12300.543275 -> -12218.081176 3 swaps done . Log(lk) : -12218.081176 -> -12205.410108 0 swap done . Log(lk) : -12205.410108 -> -12202.555503 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12144.432295 -> -12141.349681 1 swap done . Log(lk) : -12141.349681 -> -12140.623884 1 swap done . Log(lk) : -12140.623884 -> -12140.319517 0 swap done . Log(lk) : -12140.319517 -> -12140.171421 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12140.101967 -> -12140.024635 0 swap done . Log(lk) : -12140.024635 -> -12139.985435 0 swap done . Log(lk) : -12139.985435 -> -12139.964721 0 swap done . Log(lk) : -12139.964721 -> -12139.953630 0 swap done . Last optimization step... . Log(lk) : * -> -12139.944730 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.944730 -> -12139.941348 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.941348 -> -12139.940582 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.940582 -> -12139.940409 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.940409 -> -12139.940375 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.940375 -> -12139.940367 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.940367 -> -12139.940366 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12139.940366 -> -12139.940366 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -12139.940366 . Time used 0h0m22s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 19.54user 0.00system 0:21.82elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps