Sequence filename : /auto/dufayard/res/simu_2.4.5/data68.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10531752 . Log(lk) : * -> -9083.719024 . Log(lk) : -9083.719024 -> -9034.732969 4 swaps done . Log(lk) : -9034.732969 -> -9026.072664 2 swaps done . Log(lk) : -9026.072664 -> -9009.411652 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8971.087084 -> -8965.101950 1 swap done . Log(lk) : -8965.101950 -> -8964.276478 0 swap done . Log(lk) : -8964.276478 -> -8964.100133 0 swap done . Log(lk) : -8964.100133 -> -8964.044502 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8964.005804 -> -8963.984011 0 swap done . Log(lk) : -8963.984011 -> -8963.974235 0 swap done . Log(lk) : -8963.974235 -> -8963.969407 0 swap done . Last optimization step... . Log(lk) : * -> -8963.965715 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8963.965715 -> -8963.964362 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8963.964362 -> -8963.964102 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8963.964102 -> -8963.964024 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8963.964024 -> -8963.964011 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8963.964011 -> -8963.964007 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8963.964007 -> -8963.964006 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8963.964006 . Time used 0h0m18s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 16.04user 0.00system 0:18.57elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps