Sequence filename : /auto/dufayard/res/simu_2.4.5/data69.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11466224 . Log(lk) : * -> -11224.244271 . Log(lk) : -11224.244271 -> -11124.587348 4 swaps done . Log(lk) : -11124.587348 -> -11104.763120 3 swaps done . Log(lk) : -11104.763120 -> -11100.876605 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11047.048697 -> -11042.873610 1 swap done . Log(lk) : -11042.873610 -> -11042.555920 1 swap done . Log(lk) : -11042.555920 -> -11041.562847 1 swap done . Log(lk) : -11041.562847 -> -11040.740612 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.627692 -> -11040.373913 0 swap done . Log(lk) : -11040.373913 -> -11040.256087 0 swap done . Log(lk) : -11040.256087 -> -11040.195345 0 swap done . Log(lk) : -11040.195345 -> -11040.161694 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.161532 -> -11040.142445 0 swap done . Last optimization step... . Log(lk) : * -> -11040.124297 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.124297 -> -11040.118114 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.118114 -> -11040.116136 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.116136 -> -11040.115488 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.115488 -> -11040.115305 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.115305 -> -11040.115245 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.115245 -> -11040.115227 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.115227 -> -11040.115220 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.115220 -> -11040.115218 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -11040.115218 -> -11040.115217 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -11040.115217 . Time used 0h0m24s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 22.05user 0.00system 0:23.73elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps