Sequence filename : /auto/dufayard/res/simu_2.4.5/data71.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11491480 . Log(lk) : * -> -11054.939673 . Log(lk) : -11054.939673 -> -10978.487426 4 swaps done . Log(lk) : -10978.487426 -> -10960.139818 3 swaps done . Log(lk) : -10960.139818 -> -10956.763007 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10927.928509 -> -10925.410759 0 swap done . Log(lk) : -10925.410759 -> -10924.880097 0 swap done . Log(lk) : -10924.880097 -> -10924.655319 0 swap done . Log(lk) : -10924.655319 -> -10924.543758 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.450365 -> -10924.385292 0 swap done . Last optimization step... . Log(lk) : * -> -10924.336976 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.336976 -> -10924.317546 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.317546 -> -10924.312426 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.312426 -> -10924.311001 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.311001 -> -10924.310590 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310590 -> -10924.310463 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310463 -> -10924.310420 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310420 -> -10924.310404 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310404 -> -10924.310397 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310397 -> -10924.310394 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310394 -> -10924.310392 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10924.310392 -> -10924.310392 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10924.310392 . Time used 0h0m21s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 18.36user 0.00system 0:20.92elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps