Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data72.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 8612296

. Log(lk) :               * ->    -5691.855485 
. Log(lk) :    -5691.855485 ->    -5673.602417   1 swap  done
. Log(lk) :    -5673.602417 ->    -5668.893490   1 swap  done
. Log(lk) :    -5668.893490 ->    -5668.154543   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.814391 ->    -5650.597271   0 swap  done
. Log(lk) :    -5650.597271 ->    -5650.551169   0 swap  done
. Log(lk) :    -5650.551169 ->    -5650.536652   0 swap  done
. Log(lk) :    -5650.536652 ->    -5650.531418   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.521419 ->    -5650.519350   0 swap  done
. Log(lk) :    -5650.519350 ->    -5650.518549   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -5650.518098 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.518098 ->    -5650.517985 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.517985 ->    -5650.517966 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.517966 ->    -5650.517962 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.517962 ->    -5650.517960 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5650.517960 ->    -5650.517959 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -5650.517958 


. Time used 0h0m13s

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11.75user 0.00system 0:12.19elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps