Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data73.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9395232

. Log(lk) :               * ->    -6935.175240 
. Log(lk) :    -6935.175240 ->    -6891.737715   3 swaps done 
. Log(lk) :    -6891.737715 ->    -6885.283645   2 swaps done 
. Log(lk) :    -6885.283645 ->    -6884.599024   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6848.159529 ->    -6847.136059   1 swap  done
. Log(lk) :    -6847.136059 ->    -6846.937518   0 swap  done
. Log(lk) :    -6846.937518 ->    -6846.860529   0 swap  done
. Log(lk) :    -6846.860529 ->    -6846.829398   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.692963 ->    -6846.679024   0 swap  done
. Log(lk) :    -6846.679024 ->    -6846.673571   0 swap  done
. Log(lk) :    -6846.673571 ->    -6846.671197   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -6846.669648 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.669648 ->    -6846.669113 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.669113 ->    -6846.669012 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.669012 ->    -6846.668989 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.668989 ->    -6846.668984 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.668984 ->    -6846.668981 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6846.668981 ->    -6846.668980 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -6846.668980 


. Time used 0h0m16s

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15.20user 0.00system 0:16.35elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps